Datasets y scripts de análisis en R de redes de interacción (frugívora y dispersión de semillas) en los dominios biogeográficos Chaqueño y Paranaense

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Título

Datasets y scripts de análisis en R de redes de interacción (frugívora y dispersión de semillas) en los dominios biogeográficos Chaqueño y Paranaense

Autor(es)

Berón, Ignacio José; Emer, Carine

Afiliación(es) del/de los autor(es)

Berón, Ignacio José. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto Nacional de Limnología. Universidad Nacional del Litoral. Instituto Nacional de Limnología; Argentina
Emer, Carine. Instituto de Pesquisas Jardim Botânico; Brasil

Resumen

README - Datasets y scripts de análisis en R de redes de interacción (frugívora y dispersión de semillas) en los dominios biogeográficos Chaqueño y Paranaense. data/ ├── data-birds.xlsx ├── data-plants.xlsx ├── data-cz-values-interactions-parana.xlsx ├── data-METANETWORKS-QC.xlsx └── data-METANETWORKS-QS.xlsx scripts/ ├── script-metanetwork-plot.txt ├── script-centrality.txt ├── script-cz-values-interactions-paranatable.txt ├── script-czvalues-vs-status-lifeform.txt └── script-heatmap-plot.txt ├── script-null-models.txt ├── script-upset-plot.txt ├── script-beta-harvesine-pearsontest-manteltest.txt Dataset descriptions #data-birds.xlsx Description: Qualitative (presence/absence) list of bird species and their corresponding study site. Columns: bird species names. Rows: study sites Cells: qualitative information (presence/absence) (0/1) #data-plants.xlsx Description: Qualitative list (presence/absence) of plant species and their corresponding study site. Columns: plant species names. Cells: qualitative information (presence/absence) (0/1) #data-cz-values-interactions-parana.xlsx Description: c-z connectivity values for species in the Paraná metanetwork, based on the framework. Columns: interactions: birs-plant interaction names. c: among-module connectivity z: within-module connectivity status: bird status, R = resident, M = migratory sform: life form of plants, AH = Annual herb, CP = Climbing plant, PB = Parasite bush, S = Shrub, S/H = Shrub/Tree, T = Tree, NN = Unidentified species. #data-METANETWORKS-QC.xlsx Description: Qualitative interaction matrix of bird-plant interactions from six sampling sites within the Chaco and Paraná Domains. Rows: sampling sites (6) Columns: interacting species pairs Cells: qualitative information (presence/absence) (0/1) #data-METANETWORKS-QS.xlsx Description: Quantitative interaction matrix of plant–bird interactions from six sampling sites within the Paranaense domain. Rows: sampling sites (6) Columns: interacting species pairs Cells: quantitative information, interaction frequency values Scripts Overview 1. script-metanetwork-plot.txt Constructs and plots a meta-network of species interactions across sampling sites. Uses bipartite networks to visualize site-species linkage. 2. script-centrality.txt Calculates and visualizes species-level centrality metrics (degree, betweenness) from the meta-network. Includes plots by domain (Chaco/Paraná). 3. script-cz-values-interactions-paranatable.txt Calculates c and z values (within-module and among-module connectivity) and generates tables distinguishing interaction roles within Paraná sites. 4. script-czvalues-vs-status-lifeform.txt Analyzes the relationship between c–z values and species traits (bird status and plant life forms). Outputs comparative boxplots. 5. script-heatmap-plot.txt Creates heatmaps representing the beta diversity across sites or modules. 6. script-null-models.txt Generates null models to assess whether observed network metrics (e.g., connectance) differ from expectations using "r2dtable" and "vaznull" randomization. Outputs Z-scores and p-values. 7. script-upset-plot.txt Creates upset plots to visualize shared and unique interactions/bird species/plant species across sites. Includes domain-specific color schemes and classification by group. 8. script-beta-harvesine-pearsontest-manteltest.txt Performs beta diversity analysis of interaction composition across sites. Calculates Jaccard or Sørensen dissimilarity, applies the Haversine formula to compute distances, and conducts Mantel tests.

Año de publicación

2026

Idioma

inglés

Formato (Tipo MIME)

application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
text/plain

Clasificación temática de acuerdo a la FORD

Ciencias biológicas

Condiciones de uso

Disponible en acceso abierto bajo licencia Creative Commons https://creativecommons.org/licenses/by/2.5/ar/

Repositorio digital

CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas

Identificador de proyecto

Consejo Nacional de Investigaciones Científicas y Técnicas/03924-SERIEA-PICT 2020

Identificador de proyecto

/03924-SERIEA-PICT 2020